[DALL-E]

The Great Cancer Escape: How Scientists Are Shutting Down a Key Trick

For years, cancer cells have used antigen escape to hide from CAR T cell therapy. A new study reveals how YTHDF2 fuels this survival trick—and how researchers are fighting back
Engineered Human Therapies
by
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December 17, 2024

Cancer has a knack for survival, twisting biology into a cloak of invisibility to dodge even our most advanced treatments. One of its cleverest tricks? Antigen escape—a molecular vanishing act that lets cancer cells slip past CAR T cell therapy, the immune system’s precision strike weapon. But now, scientists at City of Hope have exposed the master conspirator behind this escape: a protein called YTHDF2. And with it, they may have found the key to stopping cancer’s deadly game of hide-and-seek.

Overview of how YTHDF2 functions and what inhibition would mean. [Chen, Zhenhua et al. 2024 Cell]

The Challenge of Antigen Escape

Scientists at City of Hope have put the spotlight on a particularly slippery protein that allows cancer cells to dodge CAR T cell therapy. This is big news, and not just for headline-chasing journalists looking for a feel-good science story—it’s also a fascinating example of how tumor biology outwits us and how scientists are fighting back.

CAR T cell therapy, in case you missed the memo, involves genetically engineering the immune system’s T cells to hunt and kill cancer cells. It’s brilliant. It’s effective. It’s also far from perfect because cancer, as usual, finds a loophole. For some patients, particularly those with blood cancers like leukemia and lymphoma, cancer cells manage to hide by dropping key markers, effectively disappearing from the immune system’s radar. This phenomenon is called “antigen escape,” and it’s been a frustrating roadblock for scientists for years.

YTHDF2: Cancer’s Master Manipulator

Enter YTHDF2, a protein that the City of Hope researchers have now identified as an accomplice in cancer’s escape act. The new study, published in Cell, reveals that YTHDF2 doesn’t just help blood cancer cells survive—it gives them an energy boost and allows them to disappear in plain sight. This discovery is significant because, if you know where cancer is cheating, you can shut it down.

Jianjun Chen, Ph.D., and his team decided to strike back. They developed a small-molecule inhibitor called CCI-38, which targets YTHDF2 directly. In the lab, CCI-38 not only slowed down cancer cell growth but also made them easier targets for CAR T cells. If this approach works in clinical trials, it could improve CAR T cell therapy outcomes and solve the antigen escape problem for some patients.

Structure showing the targetable sites of the City of Hope-discovered YTHDF2 protein. [Dr. Jianjun Chen's Lab / City of Hope]

Why This Discovery Matters

So, what exactly is going on with YTHDF2? In simple terms, it’s doing three things, all of them sinister. First, it flips on genes that keep cancer cells well-fed and energetic. Second, it muffles the antigen biomarkers—like CD19—that CAR T cells use to identify cancer cells. And finally, as if that wasn’t bad enough, YTHDF2 appears to transform healthy blood cells into cancerous ones, a process that Dr. Chen likens to the werewolf effect. You’ve got to love a metaphor that combines molecular biology with horror tropes.

Here’s why this matters. Right now, CAR T cell therapies target the CD19 antigen, but between 28-68% of patients experience antigen escape, where cancer cells lose or suppress this marker. That’s a lot of patients falling through the cracks. Researchers are working on multi-target strategies to solve this issue, but so far, success has been mixed. Identifying and suppressing YTHDF2 could be a game-changer—not just because it prevents antigen escape, but also because it cuts off cancer’s energy supply and growth pathways.

“We believe that targeting YTHDF2 with CCI-38 will significantly enhance the effectiveness of CAR T cell therapy,” said Dr. Chen, director of the Center for RNA Biology and Therapeutics at City of Hope. His optimism seems justified: in preclinical studies, the compound reduced tumor burden and improved the likelihood of successful treatment.

The potential ripple effects are clear. By tackling antigen escape, CCI-38 could lower relapse rates and improve survival for blood cancer patients. This, in turn, means fewer rounds of grueling follow-up treatments, fewer side effects, and, frankly, a better quality of life for patients.

For Xiaolan Deng, Ph.D., a co-author of the study, this work is about more than incremental progress. “Reducing the need for follow-up treatments could lead to better long-term survival,” she explained, pointing out the economic benefits of fewer relapses and reduced treatment costs.

City of Hope has been a leader in CAR T therapy since the late 1990s. They’ve treated over 1,600 patients, developed clinical programs for a variety of cancers, and continue to tackle the immune evasion problem that has plagued the field for so long.

“Unraveling the biology underlying YTHDF2’s function will help us develop new strategies to prevent tumor cells from escaping immune surveillance,” said Zhen-Hua Chen, Ph.D., first author of the study.

To put it simply: when cancer plays hide-and-seek, scientists have to play smarter. YTHDF2 has been exposed, and CCI-38 is now in the arsenal. The fight continues, but cancer’s latest trick might not work for much longer—and if this breakthrough delivers as promised, it could pave the way for smarter, more resilient therapies that give patients a fighting chance against even the most elusive cancers.

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The Great Cancer Escape: How Scientists Are Shutting Down a Key Trick

by
December 17, 2024
[DALL-E]

The Great Cancer Escape: How Scientists Are Shutting Down a Key Trick

For years, cancer cells have used antigen escape to hide from CAR T cell therapy. A new study reveals how YTHDF2 fuels this survival trick—and how researchers are fighting back
by
December 17, 2024
[DALL-E]

Cancer has a knack for survival, twisting biology into a cloak of invisibility to dodge even our most advanced treatments. One of its cleverest tricks? Antigen escape—a molecular vanishing act that lets cancer cells slip past CAR T cell therapy, the immune system’s precision strike weapon. But now, scientists at City of Hope have exposed the master conspirator behind this escape: a protein called YTHDF2. And with it, they may have found the key to stopping cancer’s deadly game of hide-and-seek.

Overview of how YTHDF2 functions and what inhibition would mean. [Chen, Zhenhua et al. 2024 Cell]

The Challenge of Antigen Escape

Scientists at City of Hope have put the spotlight on a particularly slippery protein that allows cancer cells to dodge CAR T cell therapy. This is big news, and not just for headline-chasing journalists looking for a feel-good science story—it’s also a fascinating example of how tumor biology outwits us and how scientists are fighting back.

CAR T cell therapy, in case you missed the memo, involves genetically engineering the immune system’s T cells to hunt and kill cancer cells. It’s brilliant. It’s effective. It’s also far from perfect because cancer, as usual, finds a loophole. For some patients, particularly those with blood cancers like leukemia and lymphoma, cancer cells manage to hide by dropping key markers, effectively disappearing from the immune system’s radar. This phenomenon is called “antigen escape,” and it’s been a frustrating roadblock for scientists for years.

YTHDF2: Cancer’s Master Manipulator

Enter YTHDF2, a protein that the City of Hope researchers have now identified as an accomplice in cancer’s escape act. The new study, published in Cell, reveals that YTHDF2 doesn’t just help blood cancer cells survive—it gives them an energy boost and allows them to disappear in plain sight. This discovery is significant because, if you know where cancer is cheating, you can shut it down.

Jianjun Chen, Ph.D., and his team decided to strike back. They developed a small-molecule inhibitor called CCI-38, which targets YTHDF2 directly. In the lab, CCI-38 not only slowed down cancer cell growth but also made them easier targets for CAR T cells. If this approach works in clinical trials, it could improve CAR T cell therapy outcomes and solve the antigen escape problem for some patients.

Structure showing the targetable sites of the City of Hope-discovered YTHDF2 protein. [Dr. Jianjun Chen's Lab / City of Hope]

Why This Discovery Matters

So, what exactly is going on with YTHDF2? In simple terms, it’s doing three things, all of them sinister. First, it flips on genes that keep cancer cells well-fed and energetic. Second, it muffles the antigen biomarkers—like CD19—that CAR T cells use to identify cancer cells. And finally, as if that wasn’t bad enough, YTHDF2 appears to transform healthy blood cells into cancerous ones, a process that Dr. Chen likens to the werewolf effect. You’ve got to love a metaphor that combines molecular biology with horror tropes.

Here’s why this matters. Right now, CAR T cell therapies target the CD19 antigen, but between 28-68% of patients experience antigen escape, where cancer cells lose or suppress this marker. That’s a lot of patients falling through the cracks. Researchers are working on multi-target strategies to solve this issue, but so far, success has been mixed. Identifying and suppressing YTHDF2 could be a game-changer—not just because it prevents antigen escape, but also because it cuts off cancer’s energy supply and growth pathways.

“We believe that targeting YTHDF2 with CCI-38 will significantly enhance the effectiveness of CAR T cell therapy,” said Dr. Chen, director of the Center for RNA Biology and Therapeutics at City of Hope. His optimism seems justified: in preclinical studies, the compound reduced tumor burden and improved the likelihood of successful treatment.

The potential ripple effects are clear. By tackling antigen escape, CCI-38 could lower relapse rates and improve survival for blood cancer patients. This, in turn, means fewer rounds of grueling follow-up treatments, fewer side effects, and, frankly, a better quality of life for patients.

For Xiaolan Deng, Ph.D., a co-author of the study, this work is about more than incremental progress. “Reducing the need for follow-up treatments could lead to better long-term survival,” she explained, pointing out the economic benefits of fewer relapses and reduced treatment costs.

City of Hope has been a leader in CAR T therapy since the late 1990s. They’ve treated over 1,600 patients, developed clinical programs for a variety of cancers, and continue to tackle the immune evasion problem that has plagued the field for so long.

“Unraveling the biology underlying YTHDF2’s function will help us develop new strategies to prevent tumor cells from escaping immune surveillance,” said Zhen-Hua Chen, Ph.D., first author of the study.

To put it simply: when cancer plays hide-and-seek, scientists have to play smarter. YTHDF2 has been exposed, and CCI-38 is now in the arsenal. The fight continues, but cancer’s latest trick might not work for much longer—and if this breakthrough delivers as promised, it could pave the way for smarter, more resilient therapies that give patients a fighting chance against even the most elusive cancers.

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